PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G279600.1
Common NameB456_009G279600, LOC105770147
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 357aa    MW: 38844.1 Da    PI: 4.5287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G279600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000163053441054
                         HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         r R+d+i++  + L++l+P        +K + + +L +A++Y+k L
  Gorai.009G279600.1 305 RMRMDKIRETVSVLQSLIPGvE-----GK-DAIVVLDEAIDYLKFL 344
                         99******************44.....44.5599**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.81295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0018301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-8304351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.93E-6305349No hitNo description
Gene3DG3DSA:4.10.280.101.0E-7305351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGEGCGSWFP LAWQSHNMNP LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH  60
LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF  120
LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF  180
DDNETDVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV  240
ASSSGLTKKR KLLDGSNDDT PLLMDNTSSL NHCRCSEQED DADSSFANGQ NLRSDGMHLS  300
SGNKRMRMDK IRETVSVLQS LIPGVEGKDA IVVLDEAIDY LKFLKRKAET LGLSSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446678.10.0PREDICTED: transcription factor bHLH145-like
TrEMBLA0A0D2TST20.0A0A0D2TST2_G
STRINGPOPTR_0002s10350.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1053059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-07bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]